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EPPO-Q-bank
A database to support plant pest diagnostic activities
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General
Phytoplasmas
Organisms included
Methodology
Molecular Decision Scheme
PM 7/129
Tests published in PM7/129
DNA extration
EF-Tu
16S rDNA
ID
Blast against Q-bank Phytoplasmas sequences
Blast against Q-bank sequences
Multilocus ID
Other discipline
Arthropods
Bacteria
Fungi
Nematodes
Phytoplasmas
Plants
Viruses and Viroids
Multi-Locus Identification - Phytoplasmas
show advanced blast parameters
Blast on Locus:
16S
TUF
Full match ?
Start identification
Download Fasta
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#
Strain
Similarity
Accounted
No hit found
×
×
Blast Parameters
Minimum similarity to keep results (0-100%):
Word size (1-256):
Gap creation penalty (1-100):
Gap extension penalty (1-10):
Penalty for a nucleotide mismatch:
-1
-2
-3
Reward for a nucleotide match:
1
2
3
