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EPPO-Q-bank
A database to support plant pest diagnostic activities
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General
Viruses and viroids
Organisms included
Methodology
Methodology
Molecular tests
Sequencing
Species-specific and semi-specific tests
Generic and semi-generic tests
Electron microscopy
EPPO Standard PM 7/126
Mechanical inoculation of test plants
EPPO Standard PM 7/153
ELISA
EPPO Standard PM 7/125
ID
Blast against Q-bank Viruses and viroids sequences
Blast against Q-bank sequences
Other discipline
Arthropods
Bacteria
Fungi
Nematodes
Phytoplasmas
Plants
Viruses and Viroids
Blast against Q-Bank sequences
Pairwise sequence alignment parameters
Viruses and viroids
NCBI RefSeq
NCBI All Seq
Show advanced parameters...
The button 'NCBI RefSeq' can be used to run the blast against plant viruses RefSeq sequences retrieved from NCBI Virus on the 2023-11-17.
The button 'NCBI All Seq' can be used to run the blast against all the plant viruses sequences retrieved from NCBI Virus on the 2023-11-17.
Paste sequence to align:
load random example
Start alignment
Results
Tree
Download Fasta
Download XML
#
Reference
Score
Similarity %
Overlap %
Direction
UPGMA
Neighbor-joining
Linear
Radial
Please wait while doing calculation.
No hit found
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Blast Parameters
Minimum similarity to keep results (0-100%):
Word size (1-256):
Gap creation penalty (1-100):
Gap extension penalty (1-10):
Penalty for a nucleotide mismatch:
-1
-2
-3
Reward for a nucleotide match:
1
2
3
