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EPPO-Q-bank
A database to support plant pest diagnostic activities
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Documentation
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General
Invasive Plants
Organisms included
Methodology
Molecular Decision Scheme
PM 7/129
Tests published in PM7/129
DNA extraction
rcbL
trnH_psbA
ID
Blast against Q-bank Invasive Plants sequences
Blast against Q-bank sequences
Multilocus ID
Other discipline
Arthropods
Bacteria
Fungi
Nematodes
Phytoplasmas
Plants
Viruses and Viroids
Multi-Locus Identification - Invasive Plants
show advanced blast parameters
Blast on Locus:
16S
FULL
ITS
matK
rbcL
trnH-psbA
trnL-trnF
TUF
Full match ?
Start identification
Download Fasta
load random example
#
Specimen
Similarity
Accounted
No hit found
×
×
Blast Parameters
Minimum similarity to keep results (0-100%):
Word size (1-256):
Gap creation penalty (1-100):
Gap extension penalty (1-10):
Penalty for a nucleotide mismatch:
-1
-2
-3
Reward for a nucleotide match:
1
2
3
