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EPPO-Q-bank
A database to support plant pest diagnostic activities
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Documentation
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General
Fungi
Organisms included
Methodology
Molecular Decision Scheme
Included sequences
Primer list with details
PM 7/129
Tests published in PM7/129
DNA extraction
ITS
TEF1 (Ceratocystis)
TUB2
CALM
ACT
COI
TEF1 (Phyllosticta)
Other tests
Ceratocystis
Colletotrichum
Melampsora
Monilinia
Mycosphaerella & its anamorphs
Phoma & Phoma-like genera
Phyllosticta & Guignardia
Phytophthora
Puccinia
Stenocarpella
Thecaphora
Verticillium
ID
Blast against Q-bank Fungi sequences
Blast against Q-bank sequences
Multilocus ID
Other discipline
Arthropods
Bacteria
Fungi
Nematodes
Phytoplasmas
Plants
Viruses and Viroids
Blast against Q-Bank sequences
Pairwise sequence alignment parameters
Fungi
Show advanced parameters...
Paste sequence to align:
load random example
Start alignment
Results
Tree
Download Fasta
Download XML
#
Reference
Score
Similarity %
Overlap %
Direction
UPGMA
Neighbor-joining
Linear
Radial
Please wait while doing calculation.
No hit found
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Blast Parameters
Minimum similarity to keep results (0-100%):
Word size (1-256):
Gap creation penalty (1-100):
Gap extension penalty (1-10):
Penalty for a nucleotide mismatch:
-1
-2
-3
Reward for a nucleotide match:
1
2
3
