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EPPO-Q-bank
A database to support plant pest diagnostic activities
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General
Fungi
Organisms included
Methodology
Molecular Decision Scheme
Included sequences
Primer list with details
PM 7/129
Tests published in PM7/129
DNA extraction
ITS
TEF1 (Ceratocystis)
TUB2
CALM
ACT
COI
TEF1 (Phyllosticta)
Other tests
Ceratocystis
Colletotrichum
Melampsora
Monilinia
Mycosphaerella & its anamorphs
Phoma & Phoma-like genera
Phyllosticta & Guignardia
Phytophthora
Puccinia
Stenocarpella
Thecaphora
Verticillium
ID
Blast against Q-bank Fungi sequences
Blast against Q-bank sequences
Multilocus ID
Other discipline
Arthropods
Bacteria
Fungi
Nematodes
Phytoplasmas
Plants
Viruses and Viroids
Fungi
Methodology
Molecular Decision Scheme
Included sequences
Primer list with details
PM 7/129
Tests published in PM7/129
DNA extraction
ITS
TEF1 (Ceratocystis)
TUB2
CALM
ACT
COI
TEF1 (Phyllosticta)
Other tests
Ceratocystis
Colletotrichum
Melampsora
Monilinia
Mycosphaerella & its anamorphs
Phoma & Phoma-like genera
Phyllosticta & Guignardia
Phytophthora
Puccinia
Stenocarpella
Thecaphora
Verticillium
Conventional PCR
TEF1
(EF-1a) (Phyllosticta)
The protocol for the conventional PCR EF-1a is available in the
appendix 3
, section 2.8
of PM 7/129.