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EPPO-Q-bank
A database to support plant pest diagnostic activities
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Documentation
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General
Fungi
Organisms included
Methodology
Molecular Decision Scheme
Included sequences
Primer list with details
PM 7/129
Tests published in PM7/129
DNA extraction
ITS
TEF1 (Ceratocystis)
TUB2
CALM
ACT
COI
TEF1 (Phyllosticta)
Other tests
Ceratocystis
Colletotrichum
Melampsora
Monilinia
Mycosphaerella & its anamorphs
Phoma & Phoma-like genera
Phyllosticta & Guignardia
Phytophthora
Puccinia
Stenocarpella
Thecaphora
Verticillium
ID
Blast against Q-bank Fungi sequences
Blast against Q-bank sequences
Multilocus ID
Other discipline
Arthropods
Bacteria
Fungi
Nematodes
Phytoplasmas
Plants
Viruses and Viroids
Multi-Locus Identification - Fungi
show advanced blast parameters
Blast on Locus:
ACT
ApMat
APN2
Apn25L
CAL
CHS-1
COI
COII
GAPDH
GS
HIS3
IGS
ITS
LSU
MAT1-2
RPB1
RPB2
SOD2
SSU
TEF
TUB2
YPT1
Full match ?
Start identification
Download Fasta
load random example
#
Strain
Similarity
Accounted
No hit found
×
×
Blast Parameters
Minimum similarity to keep results (0-100%):
Word size (1-256):
Gap creation penalty (1-100):
Gap extension penalty (1-10):
Penalty for a nucleotide mismatch:
-1
-2
-3
Reward for a nucleotide match:
1
2
3
