Sequence contents of the Q-bank Fungi database
(in construction)
The Q-bank Fungi database contains various loci for different organism groups. The table below makes it easier to see how much sequence data are available for which locus per organism group. Click on the locus name to see a list of included sequences for that locus in the selected organism group. A matrix overview of all loci per organism group is also available by clicking on the respective "Show all loci for this group in matrix format" hyperlinks.
| Q-bank organism group | Locus | Abbreviation |
|---|---|---|
| Ceratocystis | Internal transcribed spacers of the nrDNA operon | ITS |
| Translation elongation factor 1-alpha | TEF | |
| Colletotrichum | Internal transcribed spacers of the nrDNA operon | ITS |
| Actin | ACT | |
| Beta-tubulin | TUB2 | |
| Calmodulin | CAL | |
| Chitin synthase | CHS-1 | |
| DNA lyase Apn1 and mating type protein Mat1-like gene | APN1/MAT1 | |
| Glutamine synthase | GS | |
| Glyceraldehyde-3-phosphate dehydrogenase | GAPDH | |
| Histone H3 | HIS-3 | |
| Manganese-superoxide dismutase | SOD2 | |
| Mating type protein MAT1-2 | MAT1-2 | |
| Putative DNA lyase | APN2 | |
| RNA polymerase II second largest subunit | RPB2 | |
| 18S nrDNA small subunit | SSU | |
| 28S nrDNA large subunit | LSU | |
| Melampsora | Internal transcribed spacers of the nrDNA operon | ITS |
| Cytochrome oxidase I | COI | |
| 28S nrDNA large subunit | LSU | |
| Monilinia | Internal transcribed spacers of the nrDNA operon | ITS |
| Translation elongation factor 1-alpha | TEF | |
| Mycosphaerella and anamorphs | Internal transcribed spacers of the nrDNA operon | ITS |
| Actin | ACT | |
| Beta-tubulin | TUB2 | |
| Calmodulin | CAL | |
| RNA polymerase II second largest subunit | RPB2 | |
| Translation elongation factor 1-alpha | TEF | |
| 28S nrDNA large subunit | LSU | |
| Phoma(-like) genera | Internal transcribed spacers of the nrDNA operon | ITS |
| Actin | ACT | |
| Beta-tubulin | TUB2 | |
| Calmodulin | CAL | |
| Chitin synthase | CHS-1 | |
| RNA polymerase II largest subunit | RPB1 | |
| Translation elongation factor 1-alpha | TEF | |
| 18S nrDNA small subunit | SSU | |
| 28S nrDNA large subunit | LSU | |
| Phyllosticta/Guignardia | Internal transcribed spacers of the nrDNA operon | ITS |
| Actin | ACT | |
| Glyceraldehyde-3-phosphate dehydrogenase | GAPDH | |
| Translation elongation factor 1-alpha | TEF | |
| 28S nrDNA large subunit | LSU | |
| Phytophthora | Internal transcribed spacers of the nrDNA operon | ITS |
| Beta-tubulin | TUB2 | |
| Cytochrome oxidase I | COI | |
| Cytochrome oxidase II | COII | |
| Intergenic spacer of the nrDNA operon | IGS | |
| Ras-related protein-coding gene | YPT1 | |
| Translation elongation factor 1-alpha | TEF | |
| Puccinia | Internal transcribed spacers of the nrDNA operon | ITS |
| Intergenic spacer of the nrDNA operon | IGS | |
| 28S nrDNA large subunit | LSU | |
| Stenocarpella | Internal transcribed spacers of the nrDNA operon | ITS |
| Translation elongation factor 1-alpha | TEF | |
| 28S nrDNA large subunit | LSU | |
| Thecaphora | Internal transcribed spacers of the nrDNA operon | ITS |
| 28S nrDNA large subunit | LSU | |
| Verticillium | Internal transcribed spacers of the nrDNA operon | ITS |
| Actin | ACT | |
| Calmodulin | CAL | |
| Cytochrome oxidase I | COI | |
| Intergenic spacer of the nrDNA operon | IGS | |
| 28S nrDNA large subunit | LSU |