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EPPO-Q-bank
A database to support plant pest diagnostic activities
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Documentation
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General
Bacteria
Organisms included
Methodology
Molecular Decision Scheme
PM7/129
Tests published in PM7/129
DNA extraction
16S rDNA
Clavibacter
Xanthomonas
Ralstonia
Other tests
Xylella
Erwinia amylovora
ID
Blast against Q-bank Bacteria sequences
Blast against Q-bank sequences
Multilocus ID
Other discipline
Arthropods
Bacteria
Fungi
Nematodes
Phytoplasmas
Plants
Viruses and Viroids
Multi-Locus Identification - Bacteria
show advanced blast parameters
Blast on Locus:
16S-23S rDNA
16S rDNA
23S rDNA
AvrBs2
cysG
egl
fliC
ftsZ
gltA
gltT
groEL
gyrB
holC
hrpB
leuA
malF
mutS
nuoL
petC
pilU
recA
rpoB
Full match ?
Start identification
Download Fasta
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#
Strain
Similarity
Accounted
No hit found
×
×
Blast Parameters
Minimum similarity to keep results (0-100%):
Word size (1-256):
Gap creation penalty (1-100):
Gap extension penalty (1-10):
Penalty for a nucleotide mismatch:
-1
-2
-3
Reward for a nucleotide match:
1
2
3
