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EPPO-Q-bank
A database to support plant pest diagnostic activities
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Documentation
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General
Bacteria
Organisms included
Methodology
Molecular Decision Scheme
PM7/129
Tests published in PM7/129
DNA extraction
16S rDNA
Clavibacter
Xanthomonas
Ralstonia
Other tests
Xylella
Erwinia amylovora
ID
Blast against Q-bank Bacteria sequences
Blast against Q-bank sequences
Multilocus ID
Other discipline
Arthropods
Bacteria
Fungi
Nematodes
Phytoplasmas
Plants
Viruses and Viroids
Blast against Q-Bank sequences
Pairwise sequence alignment parameters
Bacteria
Bacteria (Clavibacter)
Bacteria (Ralstonia)
Bacteria (Xanthomonas)
Show advanced parameters...
'The buttons 'Bacteria (Clavibacter)', 'Bacteria (Ralstonia)' and 'Bacteria (Xanthomonas)' can be used to run the blast against sequences of these respective genera only.
Paste sequence to align:
load random example
The sequence should correspond to the barcode region. Using larger sequence is possible but may generate spurious results.
Start alignment
Results
Tree
Download Fasta
Download XML
#
Reference
Score
Similarity %
Overlap %
Direction
UPGMA
Neighbor-joining
Linear
Radial
Please wait while doing calculation.
No hit found
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Blast Parameters
Minimum similarity to keep results (0-100%):
Word size (1-256):
Gap creation penalty (1-100):
Gap extension penalty (1-10):
Penalty for a nucleotide mismatch:
-1
-2
-3
Reward for a nucleotide match:
1
2
3
