A database to support plant pest diagnostic activities
Molecular Decision Scheme
Tests published in PM7/129
Blast against Q-bank Bacteria sequences
Blast against Q-bank sequences
Viruses and Viroids
Blast against Q-Bank sequences
Pairwise sequence alignment parameters
Show advanced parameters...
'The buttons 'Bacteria (Clavibacter)', 'Bacteria (Ralstonia)' and 'Bacteria (Xanthomonas)' can be used to run the blast against sequences of these respective genera only.
Paste sequence to align:
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The sequence should correspond to the barcode region. Using larger sequence is possible but may generate spurious results.
Please wait while doing calculation.
No hit found
Minimum similarity to keep results (0-100%):
Word size (1-256):
Gap creation penalty (1-100):
Gap extension penalty (1-10):
Penalty for a nucleotide mismatch:
Reward for a nucleotide match: